Other packages > Find by keyword >

BIGDAWG  

Case-Control Analysis of Multi-Allelic Loci
View on CRAN: Click here


Download and install BIGDAWG package within the R console
Install from CRAN:
install.packages("BIGDAWG")

Install from Github:
library("remotes")
install_github("cran/BIGDAWG")

Install by package version:
library("remotes")
install_version("BIGDAWG", "3.0.3")



Attach the package and use:
library("BIGDAWG")
Maintained by
Steve Mack
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-06-13
Latest Update: 2021-11-17
Description:
Data sets and functions for chi-squared Hardy-Weinberg and case-control association tests of highly polymorphic genetic data [e.g., human leukocyte antigen (HLA) data]. Performs association tests at multiple levels of polymorphism (haplotype, locus and HLA amino-acids) as described in Pappas DJ, Marin W, Hollenbach JA, Mack SJ (2016) . Combines rare variants to a common class to account for sparse cells in tables as described by Hollenbach JA, Mack SJ, Thomson G, Gourraud PA (2012) .
How to cite:
Steve Mack (2015). BIGDAWG: Case-Control Analysis of Multi-Allelic Loci. R package version 3.0.3, https://cran.r-project.org/web/packages/BIGDAWG. Accessed 07 Jun. 2026.
Previous versions and publish date:
1.1.1 (2015-10-30 01:01), 1.1 (2015-06-13 14:46), 1.2.1 (2015-11-10 09:41), 1.2.6 (2016-02-20 00:42), 1.2.8 (2016-02-29 11:39), 1.3.4 (2016-04-10 00:37), 1.4.0 (2016-05-14 09:17), 1.5.4 (2016-08-28 07:35), 1.5.5 (2016-08-31 01:18), 1.13 (2017-07-08 05:30), 1.14.2 (2017-07-19 09:48), 1.14 (2017-07-10 14:21), 1.16 (2017-09-06 08:09), 2.1 (2018-02-08 23:15), 2.3.1 (2020-10-08 09:50), 2.3.6 (2021-02-11 15:30), 2.3 (2019-11-12 20:40), 3.0.3 (2021-11-17 12:50)
Other packages that cited BIGDAWG R package
View BIGDAWG citation profile
Other R packages that BIGDAWG depends, imports, suggests or enhances
Complete documentation for BIGDAWG
Functions, R codes and Examples using the BIGDAWG R package
Some associated functions: A . A.wrapper . AA.df.check . AA.df.cs . AAtable.builder . AlignObj.Create . AlignObj.Update . AlignmentFilter . Append.System . BIGDAWG . Build.Matrix . Check.Cores . Check.Data . Check.Params.GLS . Check.Params . CheckAlleles . CheckHLA . CheckLoci . CheckRelease . CheckString.Allele . CheckString.Locus . Condense.EPL . Create.Null.Table . DRB345.Check.Wrapper . DRB345.Check.Zygosity . DRB345.Exp . DRB345.parser . EVSremoval . Err.Log . Exon.Filter . ExonPtnAlign.Create . ExonPtnList . Filler . Format.Allele . Format.Tab . GL2Tab.Loci . GL2Tab.Sub . GL2Tab.wrapper . GLSconvert . GetField . GetFiles . H.MC . H.MC.wrapper . HLA_data . HWE.ChiSq . HWE . HWE.wrapper . L . L.wrapper . MergeData_Output . PgrpExtract . PgrpFormat . PreCheck . RunChiSq . RunChiSq_c . Stripper . Tab2GL.Loci . Tab2GL.Sub . Tab2GL.wrapper . TableMaker . UpdateRelease . buildHAPnames . buildHAPsets . cci . cci.pval.list . cci.pval . getAllele.Count . getCS.Mat . getCS.stat . getFileName . getHap . getObsFreq . make2x2 . makeComb . prepData . rmABstrings . summaryGeno.2 . 
Some associated R codes: A.R . A_ExonPtnAlign_functions.R . A_support_functions.R . A_wrapper.R . BIGDAWG.R . DRB_Parser.R . ErrLog.R . GL2TAB.R . GLSconvert.R . HWE.R . HWE_support_functions.R . HWE_wrapper.R . H_MC.R . H_support_functions.R . H_wrapper_MC.R . L.R . L_wrapper.R . TAB2GL.R . check_functions.R . data.R . general_functions.R . stat_functions.R . update_wrapper.R .  Full BIGDAWG package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

gRain  
Bayesian Networks
Probability propagation in graphical independence networks, also known as Bayesian networks or prob ...
Download / Learn more Package Citations See dependency  
embryogrowth  
Tools to Analyze the Thermal Reaction Norm of Embryo Growth
Tools to analyze the embryo growth and the sexualisation thermal reaction norms. See ...
Download / Learn more Package Citations See dependency  
keep  
Arrays with Better Control over Dimension Dropping
Provides arrays with flexible control over dimension dropping when subscripting. ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
roxygen2  
In-Line Documentation for R
Generate your Rd documentation, 'NAMESPACE' file, and collation field using specially formatted com ...
Download / Learn more Package Citations See dependency  
curtailment  
Finds Binary Outcome Designs Using Stochastic Curtailment
Finds single- and two-arm designs using stochastic curtailment, as described by Law et al. (2022) ...
Download / Learn more Package Citations See dependency  

27,372

R Packages

233,548

Dependencies

72,820

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA