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BIGDAWG  

Case-Control Analysis of Multi-Allelic Loci
View on CRAN: Click here


Download and install BIGDAWG package within the R console
Install from CRAN:
install.packages("BIGDAWG")

Install from Github:
library("remotes")
install_github("cran/BIGDAWG")

Install by package version:
library("remotes")
install_version("BIGDAWG", "3.0.3")



Attach the package and use:
library("BIGDAWG")
Maintained by
Steve Mack
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-06-13
Latest Update: 2021-11-17
Description:
Data sets and functions for chi-squared Hardy-Weinberg and case-control association tests of highly polymorphic genetic data [e.g., human leukocyte antigen (HLA) data]. Performs association tests at multiple levels of polymorphism (haplotype, locus and HLA amino-acids) as described in Pappas DJ, Marin W, Hollenbach JA, Mack SJ (2016) . Combines rare variants to a common class to account for sparse cells in tables as described by Hollenbach JA, Mack SJ, Thomson G, Gourraud PA (2012) .
How to cite:
Steve Mack (2015). BIGDAWG: Case-Control Analysis of Multi-Allelic Loci. R package version 3.0.3, https://cran.r-project.org/web/packages/BIGDAWG. Accessed 10 Mar. 2026.
Previous versions and publish date:
1.1.1 (2015-10-30 01:01), 1.1 (2015-06-13 14:46), 1.2.1 (2015-11-10 09:41), 1.2.6 (2016-02-20 00:42), 1.2.8 (2016-02-29 11:39), 1.3.4 (2016-04-10 00:37), 1.4.0 (2016-05-14 09:17), 1.5.4 (2016-08-28 07:35), 1.5.5 (2016-08-31 01:18), 1.13 (2017-07-08 05:30), 1.14.2 (2017-07-19 09:48), 1.14 (2017-07-10 14:21), 1.16 (2017-09-06 08:09), 2.1 (2018-02-08 23:15), 2.3.1 (2020-10-08 09:50), 2.3.6 (2021-02-11 15:30), 2.3 (2019-11-12 20:40)
Other packages that cited BIGDAWG R package
View BIGDAWG citation profile
Other R packages that BIGDAWG depends, imports, suggests or enhances
Complete documentation for BIGDAWG
Functions, R codes and Examples using the BIGDAWG R package
Some associated functions: A . A.wrapper . AA.df.check . AA.df.cs . AAtable.builder . AlignObj.Create . AlignObj.Update . AlignmentFilter . Append.System . BIGDAWG . Build.Matrix . Check.Cores . Check.Data . Check.Params.GLS . Check.Params . CheckAlleles . CheckHLA . CheckLoci . CheckRelease . CheckString.Allele . CheckString.Locus . Condense.EPL . Create.Null.Table . DRB345.Check.Wrapper . DRB345.Check.Zygosity . DRB345.Exp . DRB345.parser . EVSremoval . Err.Log . Exon.Filter . ExonPtnAlign.Create . ExonPtnList . Filler . Format.Allele . Format.Tab . GL2Tab.Loci . GL2Tab.Sub . GL2Tab.wrapper . GLSconvert . GetField . GetFiles . H.MC . H.MC.wrapper . HLA_data . HWE.ChiSq . HWE . HWE.wrapper . L . L.wrapper . MergeData_Output . PgrpExtract . PgrpFormat . PreCheck . RunChiSq . RunChiSq_c . Stripper . Tab2GL.Loci . Tab2GL.Sub . Tab2GL.wrapper . TableMaker . UpdateRelease . buildHAPnames . buildHAPsets . cci . cci.pval.list . cci.pval . getAllele.Count . getCS.Mat . getCS.stat . getFileName . getHap . getObsFreq . make2x2 . makeComb . prepData . rmABstrings . summaryGeno.2 . 
Some associated R codes: A.R . A_ExonPtnAlign_functions.R . A_support_functions.R . A_wrapper.R . BIGDAWG.R . DRB_Parser.R . ErrLog.R . GL2TAB.R . GLSconvert.R . HWE.R . HWE_support_functions.R . HWE_wrapper.R . H_MC.R . H_support_functions.R . H_wrapper_MC.R . L.R . L_wrapper.R . TAB2GL.R . check_functions.R . data.R . general_functions.R . stat_functions.R . update_wrapper.R .  Full BIGDAWG package functions and examples
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