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BBNI  

Bayesian Inference of Boolean Genetic Networks
View on CRAN: Click here


Download and install BBNI package within the R console
Install from CRAN:
install.packages("BBNI")

Install from Github:
library("remotes")
install_github("cran/BBNI")

Install by package version:
library("remotes")
install_version("BBNI", "0.2.2")



Attach the package and use:
library("BBNI")
Maintained by
Anson Li
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-07-15
Latest Update: 2026-07-15
Description:
Implements a fully Bayesian Markov chain Monte Carlo (MCMC) approach for inferring the topology and Boolean logic transition functions of gene regulatory networks from noisy, binary time-series expression data. Network structure and Boolean rules are sampled jointly from their posterior distribution, providing principled uncertainty quantification rather than a single point estimate. Method described in Han et al. (2014) <doi:10.1371/journal.pone.0115806>.
How to cite:
Anson Li (2026). BBNI: Bayesian Inference of Boolean Genetic Networks. R package version 0.2.2, https://cran.r-project.org/web/packages/BBNI. Accessed 25 Oct. 2026.
Previous versions and publish date:
0.1.1 (2026-07-15 19:50), (2026-08-19 21:20)
Other packages that cited BBNI R package
View BBNI citation profile
Other R packages that BBNI depends, imports, suggests or enhances
Complete documentation for BBNI
Functions, R codes and Examples using the BBNI R package
Full BBNI package functions and examples
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