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Apoderoides
View on CRAN: Click
here
Download and install Apoderoides package within the R console
Install from CRAN:
install.packages("Apoderoides")
Install from Github:
library("remotes")
install_github("cran/Apoderoides")
Install by package version:
library("remotes")
install_version("Apoderoides", "3.0.0")
Attach the package and use:
library("Apoderoides")
Maintained by
Satoshi Aoki
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.Apoderoides . https://github.com/Sa-to-shi-A-o-ki/Apoderoides/issues . https://github.com/Sa-to-shi-A-o-ki/Apoderoides . Apoderoides results . Apoderoides.pdf . Apoderoides Tutorial . Apoderoides_3.0.1.tar.gz . Apoderoides_3.0.0.zip . Apoderoides_3.0.1.zip . Apoderoides_3.0.0.zip . Apoderoides_3.0.1.tgz . Apoderoides_3.0.1.tgz . Apoderoides_3.0.1.tgz . Apoderoides_3.0.1.tgz . Apoderoides archive . https://CRAN.R-project.org/package=Apoderoides .
First Published: 2024-01-11
Latest Update: 2024-01-14
Description:
Finds, prioritizes and deletes erroneous taxa in a phylogenetic tree. This package calculates scores for taxa in a tree. Higher score means the taxon is more erroneous. If the score is zero for a taxon, the taxon is not erroneous. This package also can remove all erroneous taxa automatically by iterating score calculation and pruning taxa with the highest score.
How to cite:
Satoshi Aoki (2024). Apoderoides: Prioritize and Delete Erroneous Taxa in a Large Phylogenetic Tree. R package version 3.0.0, https://cran.r-project.org/web/packages/Apoderoides. Accessed 10 May. 2025.
Previous versions and publish date:
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Complete documentation for Apoderoides
Functions, R codes and Examples using
the Apoderoides R package
Some associated functions: Apoderoides-internal . autoDeletion . calc.Score . deleteAnomaly . get.upperRank . getAllCentroids . testRankList . testTree .
Some associated R codes: Apoderoides.R . RcppExports.R . Full Apoderoides package functions and examples
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