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AntMAN  

Anthology of Mixture Analysis Tools
View on CRAN: Click here


Download and install AntMAN package within the R console
Install from CRAN:
install.packages("AntMAN")

Install from Github:
library("remotes")
install_github("cran/AntMAN")

Install by package version:
library("remotes")
install_version("AntMAN", "1.1.0")



Attach the package and use:
library("AntMAN")
Maintained by
Bruno Bodin
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-10-28
Latest Update: 2021-07-23
Description:
Fits finite Bayesian mixture models with a random number of components. The MCMC algorithm implemented is based on point processes as proposed by Argiento and De Iorio (2019) and offers a more computationally efficient alternative to reversible jump. Different mixture kernels can be specified: univariate Gaussian, multivariate Gaussian, univariate Poisson, and multivariate Bernoulli (latent class analysis). For the parameters characterising the mixture kernel, we specify conjugate priors, with possibly user specified hyper-parameters. We allow for different choices for the prior on the number of components: shifted Poisson, negative binomial, and point masses (i.e. mixtures with fixed number of components).
How to cite:
Bruno Bodin (2019). AntMAN: Anthology of Mixture Analysis Tools. R package version 1.1.0, https://cran.r-project.org/web/packages/AntMAN
Previous versions and publish date:
1.0 (2019-10-28 16:20)
Other packages that cited AntMAN R package
View AntMAN citation profile
Other R packages that AntMAN depends, imports, suggests or enhances
Functions, R codes and Examples using the AntMAN R package
Some associated functions: AM_clustering . AM_coclustering . AM_demo_mvb_poi . AM_demo_mvn_poi . AM_demo_uvn_poi . AM_demo_uvp_poi . AM_emp_bayes_uninorm . AM_extract . AM_find_gamma_Delta . AM_find_gamma_NegBin . AM_find_gamma_Pois . AM_mcmc_configuration . AM_mcmc_fit . AM_mcmc_output . AM_mcmc_parameters . AM_mcmc_refit . AM_mix_components_prior . AM_mix_components_prior_dirac . AM_mix_components_prior_negbin . AM_mix_components_prior_pois . AM_mix_hyperparams . AM_mix_hyperparams_multiber . AM_mix_hyperparams_multinorm . AM_mix_hyperparams_uninorm . AM_mix_hyperparams_unipois . AM_mix_weights_prior . AM_mix_weights_prior_gamma . AM_plot_chaincor . AM_plot_density . AM_plot_mvb_cluster_frequency . AM_plot_pairs . AM_plot_pmf . AM_plot_similarity_matrix . AM_plot_traces . AM_plot_values . AM_prior . AM_prior_K_Delta . AM_prior_K_NegBin . AM_prior_K_Pois . AM_salso . AM_sample_multibin . AM_sample_multinorm . AM_sample_uninorm . AM_sample_unipois . AntMAN . IAM_VnkDelta . IAM_VnkNegBin . IAM_VnkPoisson . IAM_compute_stirling_ricor_abs . IAM_compute_stirling_ricor_log . IAM_mcmc_error . IAM_mcmc_neff . brain . carcinoma . galaxy . list_values . plot.AM_mcmc_output . plot.AM_prior . said . summary.AM_mcmc_configuration . summary.AM_mcmc_output . summary.AM_mix_components_prior . summary.AM_mix_hyperparams . summary.AM_mix_weights_prior . summary.AM_prior . 
Some associated R codes: AM_binder.R . AM_coclustering.R . AM_demo.R . AM_emp_bayes.R . AM_extract.R . AM_find_gamma.R . AM_mcmc.R . AM_mix_components_prior.R . AM_mix_hyperparams.R . AM_mix_weights_prior.R . AM_plot.R . AM_prior.R . AM_sample.R . AntMANDatasets.R . AntMANPackage.R . INTERNAL_functions_antman_uninorm.R . INTERNAL_utilities.R . RcppExports.R .  Full AntMAN package functions and examples
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