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AnimalHabitatNetwork
View on CRAN: Click
here
Download and install AnimalHabitatNetwork package within the R console
Install from CRAN:
install.packages("AnimalHabitatNetwork")
Install from Github:
library("remotes")
install_github("cran/AnimalHabitatNetwork")
Install by package version:
library("remotes")
install_version("AnimalHabitatNetwork", "0.1.0")
Attach the package and use:
library("AnimalHabitatNetwork")
Maintained by
Peng He
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-11-25
Latest Update: 2019-11-25
Description:
Functions for generating and visualising networks for characterising the physical attributes and spatial organisations of habitat components (i.e. habitat physical configurations). The network generating algorithm first determines the X and Y coordinates of N nodes within a rectangle with a side length of L and an area of A. Then it computes the pair-wise Euclidean distance Dij between node i and j, and then a complete network with 1/Dij as link weights is constructed. Then, the algorithm removes links from the complete network with the probability as shown in the function ahn_prob(). Such link removals can make the network disconnected whereas a connected network is wanted. In such cases, the algorithm rewires one network component to its spatially nearest neighbouring component and repeat doing this until the network is connected again. Finally, it outputs an undirected network (weighted or unweighted, connected or disconnected). This package came with a manuscript on modelling the physical configurations of animal habitats using networks (in preparation).
How to cite:
Peng He (2019). AnimalHabitatNetwork: Networks Characterising the Physical Configurations of Animal Habitats. R package version 0.1.0, https://cran.r-project.org/web/packages/AnimalHabitatNetwork. Accessed 06 Nov. 2024.
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Complete documentation for AnimalHabitatNetwork
Functions, R codes and Examples using
the AnimalHabitatNetwork R package
Some associated functions: ahn_gen . ahn_plot . ahn_prob .
Some associated R codes: ahn_gen.R . ahn_plot.R . ahn_prob.R . Full AnimalHabitatNetwork package functions and examples
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