Other packages > Find by keyword >

AmpliconDuo  

Statistical Analysis of Amplicon Data of the Same Sample to Identify Artefacts
View on CRAN: Click here


Download and install AmpliconDuo package within the R console
Install from CRAN:
install.packages("AmpliconDuo")

Install from Github:
library("remotes")
install_github("cran/AmpliconDuo")

Install by package version:
library("remotes")
install_version("AmpliconDuo", "1.1.1")



Attach the package and use:
library("AmpliconDuo")
Maintained by
Anja Lange
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-03-20
Latest Update: 2020-05-25
Description:
Increasingly powerful techniques for high-throughput sequencing open the possibility to comprehensively characterize microbial communities, including rare species. However, a still unresolved issue are the substantial error rates in the experimental process generating these sequences. To overcome these limitations we propose an approach, where each sample is split and the same amplification and sequencing protocol is applied to both halves. This procedure should allow to detect likely PCR and sequencing artifacts, and true rare species by comparison of the results of both parts. The AmpliconDuo package, whereas amplicon duo from here on refers to the two amplicon data sets of a split sample, is intended to help interpret the obtained read frequency distribution across split samples, and to filter the false positive reads.
How to cite:
Anja Lange (2014). AmpliconDuo: Statistical Analysis of Amplicon Data of the Same Sample to Identify Artefacts. R package version 1.1.1, https://cran.r-project.org/web/packages/AmpliconDuo. Accessed 12 Oct. 2026.
Previous versions and publish date:
1.0 (2014-03-20 17:53), 1.1.1 (2020-05-26 00:20), 1.1 (2016-01-19 13:09), (2026-10-12 14:07)
Other packages that cited AmpliconDuo R package
View AmpliconDuo citation profile
Other R packages that AmpliconDuo depends, imports, suggests or enhances
Complete documentation for AmpliconDuo
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

SLEMI  
Statistical Learning Based Estimation of Mutual Information
The implementation of the algorithm for estimation of mutual information and channel capacity from e ...
Download / Learn more Package Citations See dependency  
gwavr  
Get Water Attributes Visually in R
Provides methods to Get Water Attributes Visually in R ('gwavr'). This allows the user to point and ...
Download / Learn more Package Citations See dependency  
cglasso  
Conditional Graphical LASSO for Gaussian Graphical Models with Censored and Missing Values
Conditional graphical lasso estimator is an extension of the graphical lasso proposed to estimate th ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
ggparliament  
Parliament Plots
Simple parliament plots using 'ggplot2'. Visualize election results as points in the architectural l ...
Download / Learn more Package Citations See dependency  

29,000

R Packages

247,686

Dependencies

76,729

Author Associations

29,001

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA