Other packages > Find by keyword >

AllelicSeries  

Allelic Series Test
View on CRAN: Click here


Download and install AllelicSeries package within the R console
Install from CRAN:
install.packages("AllelicSeries")

Install from Github:
library("remotes")
install_github("cran/AllelicSeries")

Install by package version:
library("remotes")
install_version("AllelicSeries", "0.1.1.5")



Attach the package and use:
library("AllelicSeries")
Maintained by
Zachary McCaw
[Scholar Profile | Author Map]
First Published: 2023-01-13
Latest Update: 2023-10-06
Description:
Implementation of gene-level rare variant association tests targeting allelic series: genes where increasingly deleterious mutations have increasingly large phenotypic effects. The COding-variant Allelic Series Test (COAST) operates on the benign missense variants (BMVs), deleterious missense variants (DMVs), and protein truncating variants (PTVs) within a gene. COAST uses a set of adjustable weights that tailor the test towards rejecting the null hypothesis for genes where the average magnitude of effect increases monotonically from BMVs to DMVs to PTVs. See McCaw ZR, O
How to cite:
Zachary McCaw (2023). AllelicSeries: Allelic Series Test. R package version 0.1.1.5, https://cran.r-project.org/web/packages/AllelicSeries. Accessed 10 May. 2025.
Previous versions and publish date:
0.0.2.2 (2023-01-13 20:00), 0.0.3.0 (2023-05-01 23:50), 0.0.4.1 (2023-10-06 08:40), 0.1.0.2 (2024-10-22 18:30), 0.1.1.1 (2024-11-22 04:20), 0.1.1.2 (2024-11-23 16:20)
Other packages that cited AllelicSeries R package
View AllelicSeries citation profile
Other R packages that AllelicSeries depends, imports, suggests or enhances
Complete documentation for AllelicSeries
Functions, R codes and Examples using the AllelicSeries R package
Some associated functions: ASBT . ASKAT . Aggregator . AllelicSeries-help . AllelicSeries-package . COAST . CalcRegParam . CheckInputs . Comparator . DGP . FilterGenos . GenAnno . GenCovar . GenGeno . GenGenoMat . GenPheno . OLS . ResidVar . Score . 
Some associated R codes: RcppExports.R . allelic_series_test.R . allelicseries-package.R . comparators.R . generate_data.R . input_checks.R . utilities.R .  Full AllelicSeries package functions and examples
Downloads during the last 30 days
04/1004/1104/1204/1304/1404/1504/1604/1704/1804/1904/2004/2104/2204/2304/2404/2504/2604/2704/2804/2904/3005/0105/0205/0305/0405/0505/0605/0705/08Downloads for AllelicSeries51015202530354045TrendBars

Today's Hot Picks in Authors and Packages

distreg.vis  
Framework for the Visualization of Distributional Regression Models
Functions for visualizing distributional regression models fitted using the 'gamlss', 'bamlss' or 'b ...
Download / Learn more Package Citations See dependency  
specklestar  
Reduction of Speckle Data from BTA 6-m Telescope
A set of functions for obtaining positional parameters and magnitude difference between components o ...
Download / Learn more Package Citations See dependency  
dataprep  
Efficient and Flexible Data Preprocessing Tools
Efficiently and flexibly preprocess data using a set of data filtering, deletion, and interpolation ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
hdpGLM  
Hierarchical Dirichlet Process Generalized Linear Models
Implementation of MCMC algorithms to estimate the Hierarchical Dirichlet Process Generalized Linear ...
Download / Learn more Package Citations See dependency  

24,205

R Packages

207,311

Dependencies

65,402

Author Associations

24,206

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA