Other packages > Find by keyword >

AlleleShift  

Predict and Visualize Population-Level Changes in Allele Frequencies in Response to Climate Change
View on CRAN: Click here


Download and install AlleleShift package within the R console
Install from CRAN:
install.packages("AlleleShift")

Install from Github:
library("remotes")
install_github("cran/AlleleShift")

Install by package version:
library("remotes")
install_version("AlleleShift", "1.1-3")



Attach the package and use:
library("AlleleShift")
Maintained by
Roeland Kindt
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-01-26
Latest Update: 2023-10-28
Description:
Methods () are provided of calibrating and predicting shifts in allele frequencies through redundancy analysis ('vegan::rda()') and generalized additive models ('mgcv::gam()'). Visualization functions for predicted changes in allele frequencies include 'shift.dot.ggplot()', 'shift.pie.ggplot()', 'shift.moon.ggplot()', 'shift.waffle.ggplot()' and 'shift.surf.ggplot()' that are made with input data sets that are prepared by helper functions for each visualization method. Examples in the documentation show how to prepare animated climate change graphics through a time series with the 'gganimate' package. Function 'amova.rda()' shows how Analysis of Molecular Variance can be directly conducted with the results from redundancy analysis.
How to cite:
Roeland Kindt (2021). AlleleShift: Predict and Visualize Population-Level Changes in Allele Frequencies in Response to Climate Change. R package version 1.1-3, https://cran.r-project.org/web/packages/AlleleShift. Accessed 07 Mar. 2026.
Previous versions and publish date:
0.9-2 (2021-01-29 11:50), 0.9 (2021-01-26 14:00), 1.0-1 (2021-04-07 11:10), 1.0-2 (2021-08-14 16:20), 1.1-2 (2023-10-28 23:50), 1.1 (2022-09-07 14:50)
Other packages that cited AlleleShift R package
View AlleleShift citation profile
Other R packages that AlleleShift depends, imports, suggests or enhances
Complete documentation for AlleleShift
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
didrooRFM  
Compute Recency Frequency Monetary Scores for your Customer Data
This hosts the findRFM function which generates RFM scores on a 1-5 point scale for customer transa ...
Download / Learn more Package Citations See dependency  
factoextra  
Extract and Visualize the Results of Multivariate Data Analyses
Provides some easy-to-use functions to extract and visualize the output of multivariate data analys ...
Download / Learn more Package Citations See dependency  
momentfit  
Methods of Moments
Several classes for moment-based models are defined. The classes are defined for moment conditions d ...
Download / Learn more Package Citations See dependency  
prepdat  
Preparing Experimental Data for Statistical Analysis
Prepares data for statistical analysis (e.g., analysis of variance ;ANOVA) by enabling the user to ...
Download / Learn more Package Citations See dependency  
RobPer  
Robust Periodogram and Periodicity Detection Methods
Calculates periodograms based on (robustly) fitting periodic functions to light curves (irregularly ...
Download / Learn more Package Citations See dependency  

26,270

R Packages

223,360

Dependencies

70,376

Author Associations

26,265

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA