Other packages > Find by keyword >

AlleleShift  

Predict and Visualize Population-Level Changes in Allele Frequencies in Response to Climate Change
View on CRAN: Click here


Download and install AlleleShift package within the R console
Install from CRAN:
install.packages("AlleleShift")

Install from Github:
library("remotes")
install_github("cran/AlleleShift")

Install by package version:
library("remotes")
install_version("AlleleShift", "1.1-2")



Attach the package and use:
library("AlleleShift")
Maintained by
Roeland Kindt
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-01-29
Latest Update: 2023-10-28
Description:
Methods () are provided of calibrating and predicting shifts in allele frequencies through redundancy analysis ('vegan::rda()') and generalized additive models ('mgcv::gam()'). Visualization functions for predicted changes in allele frequencies include 'shift.dot.ggplot()', 'shift.pie.ggplot()', 'shift.moon.ggplot()', 'shift.waffle.ggplot()' and 'shift.surf.ggplot()' that are made with input data sets that are prepared by helper functions for each visualization method. Examples in the documentation show how to prepare animated climate change graphics through a time series with the 'gganimate' package. Function 'amova.rda()' shows how Analysis of Molecular Variance can be directly conducted with the results from redundancy analysis.
How to cite:
Roeland Kindt (2021). AlleleShift: Predict and Visualize Population-Level Changes in Allele Frequencies in Response to Climate Change. R package version 1.1-2, https://cran.r-project.org/web/packages/AlleleShift. Accessed 06 Nov. 2024.
Previous versions and publish date:
0.9-2 (2021-01-29 11:50), 0.9 (2021-01-26 14:00), 1.0-1 (2021-04-07 11:10), 1.0-2 (2021-08-14 16:20), 1.1 (2022-09-07 14:50)
Other packages that cited AlleleShift R package
View AlleleShift citation profile
Other R packages that AlleleShift depends, imports, suggests or enhances
Complete documentation for AlleleShift
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

maic  
Matching-Adjusted Indirect Comparison
A generalised workflow for generation of subject weights to be used in Matching-Adjusted Indirect C ...
Download / Learn more Package Citations See dependency  
seriation  
Infrastructure for Ordering Objects Using Seriation
Infrastructure for ordering objects with an implementation of several seriation/sequencing/ordinati ...
Download / Learn more Package Citations See dependency  
memoise  
'Memoisation' of Functions
Cache the results of a function so that when you call it again with the same arguments it returns t ...
Download / Learn more Package Citations See dependency  
ddp  
Desirable Dietary Pattern
The desirable Dietary Pattern (DDP)/ PPH score measures the variety of food consumption. The (weigh ...
Download / Learn more Package Citations See dependency  
mailR  
A Utility to Send Emails from R
Interface to Apache Commons Email to send emails from R. ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

23,092

R Packages

198,677

Dependencies

62,675

Author Associations

23,089

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA