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ARTP2  

Pathway and Gene-Level Association Test
View on CRAN: Click here


Download and install ARTP2 package within the R console
Install from CRAN:
install.packages("ARTP2")

Install from Github:
library("remotes")
install_github("cran/ARTP2")

Install by package version:
library("remotes")
install_version("ARTP2", "0.9.45")



Attach the package and use:
library("ARTP2")
Maintained by
Bill Wheeler
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-02-11
Latest Update: 2023-05-01
Description:
Pathway and gene level association test using raw data or summary statistics.
How to cite:
Bill Wheeler (2016). ARTP2: Pathway and Gene-Level Association Test. R package version 0.9.45, https://cran.r-project.org/web/packages/ARTP2. Accessed 21 Apr. 2025.
Previous versions and publish date:
0.9.21 (2016-02-11 08:27), 0.9.22 (2016-02-12 00:57), 0.9.30.1 (2016-07-11 14:43), 0.9.30 (2016-07-11 08:44), 0.9.32 (2017-05-24 09:05), 0.9.44 (2018-09-11 23:50), 0.9.45 (2018-11-30 22:30)
Other packages that cited ARTP2 R package
View ARTP2 citation profile
Other R packages that ARTP2 depends, imports, suggests or enhances
Functions, R codes and Examples using the ARTP2 R package
Some associated functions: ARTP2-package . data . exclude.snps . geno . inflation . meta . options.default . options . pathway . rARTP . read.bed . ref.does . ref.geno . sARTP . subj.id . warm.start . 
Some associated R codes: HWE.exact.R . align.ambig.meta.R . align.ambig.snps.R . align.ambig.study.R . align.reference.R . ambig.check.data.R . ambig.snps.R . artp2.R . artp2.chr.R . artp2.select.genes.R . assign.subject.id.R . check.misleading.factor.R . check.os.R . check.small.level.R . complete.sum.stat.R . convert.header.R . convert.method.R . cov.svd.R . create.formula.R . create.gene.cutpoint.R . create.group.R . create.pathway.cutpoint.R . create.sub.pathway.R . create.super.pathway.R . create.super.pathway.setup.R . create.yx.R . data.parse.R . data.subset.R . error.try.R . exclude.snps.R . expand_pathway.R . extract.conflictive.snps.R . extract.position.information.R . extract.reference.allele.R . filter.ambig.snps.R . filter.conflictive.snps.R . filter.raw.geno.R . filter.reference.geno.R . find.snps.in.regions.R . gen.stat.miss.R . generate.normal.statistics.R . generate.pathway.pvalue.stat.R . inflation.R . input.type.R . load.pathway.definition.R . load.pathway.set.R . load.reference.allele.R . load.reference.geno.R . load.summary.files.R . load.summary.statistics.R . makeVector.R . map.SNPs.to.genofiles.R . map.SNPs.to.plinkfiles.R . merge.setups.R . merge.stat.R . meta.R . multiple.comparison.summaryData.R . multiple.pathways.setup.R . norm.stat.test.R . onAttach.R . options.default.R . options.setup.R . options.validation.R . parseDelimVec.R . rARTP.R . rawData.dataframe.setup.R . rawData.genofiles.setup.R . rawData.plinkfiles.setup.R . read.bed.R . recover.stat.R . recreate.pathway.R . reference.type.R . reformat.reference.path.R . reformat.snps.R . remove.conflictive.snps.R . remove.const.covar.R . remove.redendant.covar.R . removeWhiteSpace.R . sARTP.R . split.pathway.R . split.sum.stat.R . summaryData.setup.R . test.R . tester.R . trim.deleted.snps.R . turn.off.SNP.filters.R . update.allele.info.R . update.deleted.genes.R . update.deleted.snps.R . update.direction.R . update.pathway.definition.R . update.raw.geno.R . update.ref.geno.R . update.ref.snps.R . update.setup.R . update.sf.R . update.sum.stat.R . validate.covar.R . validate.family.R . validate.genofiles.R . validate.lambda.rawData.R . validate.lambda.summaryData.R . validate.outcome.R . validate.pathway.definition.R . validate.plinkfiles.R . validate.reference.R . validate.sample.size.R . validate.setup.R . validate.summary.files.R . validate.summary.input.R . warm.start.R .  Full ARTP2 package functions and examples
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