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APackOfTheClones
View on CRAN: Click
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Download and install APackOfTheClones package within the R console
Install from CRAN:
install.packages("APackOfTheClones")
Install from Github:
library("remotes")
install_github("cran/APackOfTheClones") Install by package version:
library("remotes")
install_version("APackOfTheClones", "1.3.0") Attach the package and use:
library("APackOfTheClones")
Maintained by
Qile Yang
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[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-05-09
Latest Update: 2024-11-18
Description:
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles. The method was originally implemented by Murray Christian and Ben Murrell in the following immunology study: Ma et al. (2021) .
How to cite:
Qile Yang (2023). APackOfTheClones: Visualization of Clonal Expansion for Single Cell Immune Profiles. R package version 1.3.0, https://cran.r-project.org/web/packages/APackOfTheClones. Accessed 12 Mar. 2026.
Previous versions and publish date:
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Complete documentation for APackOfTheClones
Functions, R codes and Examples using
the APackOfTheClones R package
Some associated functions: APOTCPlot . APackOfTheClones-package . AdjustAPOTC . RunAPOTC . clonal_expansion_plot . combined_pbmc . containsApotcRun . countCloneSizes . count_clone_sizes . deleteApotcData . getApotcDataIds . getLastApotcDataId . getReductionCentroids . integrate_tcr . mini_clonotype_data . mini_seurat_obj . vizAPOTC .
Some associated R codes: APOTCPlot.R . APackOfTheClones-package.R . AdjustAPOTC.R . ApotcData.R . ApotcIndexing.R . Main_algo.R . RcppExports.R . Repulsion.R . RunAPOTC.R . aes_string.R . cluster_labels.R . clusters.R . colors.R . data.R . deprecated_functions.R . get_clone_sizes.R . insert_legend.R . parameter_estimators.R . plot_API.R . scRepertoire_v2_functions.R . seurat_command.R . utils.R . vizAPOTC.R . zzz.R . Full APackOfTheClones package functions and examples
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