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APIS
View on CRAN: Click
here
Download and install APIS package within the R console
Install from CRAN:
install.packages("APIS")
Install from Github:
library("remotes")
install_github("cran/APIS")
Install by package version:
library("remotes")
install_version("APIS", "2.0.8")
Attach the package and use:
library("APIS")
Maintained by
Julien Roche
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-08-19
Latest Update: 2023-06-30
Description:
Parentage assignment package.
Parentage assignment is performed based on observed average Mendelian transmission probability distributions or Exclusion.
The main functions of this package are the function APIS_2n(), APIS_3n and launch_APIShiny(), which perform parentage assignment.
How to cite:
Julien Roche (2019). APIS: Auto-Adaptive Parentage Inference Software Tolerant to Missing Parents. R package version 2.0.8, https://cran.r-project.org/web/packages/APIS. Accessed 06 Apr. 2025.
Previous versions and publish date:
Other packages that cited APIS R package
View APIS citation profile
Other R packages that APIS depends,
imports, suggests or enhances
Complete documentation for APIS
Functions, R codes and Examples using
the APIS R package
Some associated functions: APIS . APIS_2n . APIS_3n . APIS_dam . APIS_offspring . APIS_offspring3n . APIS_sire . allFreq . assignmentFortran . assignmentPower . assignment_power . import_from_ped . import_from_vcf . launch_APIShiny . personalThreshold . plot_delta . plot_mismatches . plot_probabilities . selectParents . setThreshold . simulate_offspring .
Some associated R codes: APIS_dam.R . APIS_functions.R . APIS_offspring.R . APIS_offspring3n.R . APIS_sire.R . App_APIS_Shiny.R . function_formating.R . function_logfile.R . function_simulate_offspring.R . function_threshold_error.R . functions_APIS_2n.R . functions_APIS_3n.R . functions_allele_frequency.R . functions_assignment_power.R . functions_assignment_rate.R . functions_check.R . functions_find_delim.R . functions_import.R . functions_pedigree.R . functions_personal_threshold.R . functions_plot.R . functions_prepare_for_assignment.R . functions_print.R . functions_probabilities.R . zzz.R . Full APIS package functions and examples
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