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AMISforInfectiousDiseases  

Implement the AMIS Algorithm for Infectious Disease Models
View on CRAN: Click here


Download and install AMISforInfectiousDiseases package within the R console
Install from CRAN:
install.packages("AMISforInfectiousDiseases")

Install from Github:
library("remotes")
install_github("cran/AMISforInfectiousDiseases")

Install by package version:
library("remotes")
install_version("AMISforInfectiousDiseases", "0.1.0")



Attach the package and use:
library("AMISforInfectiousDiseases")
Maintained by
Simon Spencer
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-01-20
Latest Update: 2025-01-20
Description:
Implements the Adaptive Multiple Importance Sampling (AMIS) algorithm, as described by Retkute et al. (2021, <doi:10.1214/21-AOAS1486>), to estimate key epidemiological parameters by combining outputs from a geostatistical model of infectious diseases (such as prevalence, incidence, or relative risk) with a disease transmission model. Utilising the resulting posterior distributions, the package enables forward projections at the local level.
How to cite:
Simon Spencer (2025). AMISforInfectiousDiseases: Implement the AMIS Algorithm for Infectious Disease Models. R package version 0.1.0, https://cran.r-project.org/web/packages/AMISforInfectiousDiseases. Accessed 24 Oct. 2026.
Previous versions and publish date:
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Complete documentation for AMISforInfectiousDiseases
Functions, R codes and Examples using the AMISforInfectiousDiseases R package
Full AMISforInfectiousDiseases package functions and examples
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