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AHMbook  

Functions and Data for the Book 'Applied Hierarchical Modeling in Ecology' Vols 1 and 2
View on CRAN: Click here


Download and install AHMbook package within the R console
Install from CRAN:
install.packages("AHMbook")

Install from Github:
library("remotes")
install_github("cran/AHMbook")

Install by package version:
library("remotes")
install_version("AHMbook", "0.2.10")



Attach the package and use:
library("AHMbook")
Maintained by
Ken Kellner
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-04-20
Latest Update: 2023-08-23
Description:
Provides functions to simulate data sets from hierarchical ecological models, including all the simulations described in the two volume publication 'Applied Hierarchical Modeling in Ecology: Analysis of distribution, abundance and species richness in R and BUGS' by Marc K
How to cite:
Ken Kellner (2017). AHMbook: Functions and Data for the Book 'Applied Hierarchical Modeling in Ecology' Vols 1 and 2. R package version 0.2.10, https://cran.r-project.org/web/packages/AHMbook. Accessed 21 Nov. 2024.
Previous versions and publish date:
0.1.3 (2017-04-20 17:08), 0.1.4 (2017-05-19 07:57), 0.2.0 (2020-06-09 15:00), 0.2.2 (2020-10-26 09:50), 0.2.3 (2021-05-17 07:00), 0.2.5 (2022-05-02 07:40), 0.2.6 (2022-06-14 13:50), 0.2.9 (2023-08-23 23:10)
Other packages that cited AHMbook R package
View AHMbook citation profile
Other R packages that AHMbook depends, imports, suggests or enhances
Complete documentation for AHMbook
Functions, R codes and Examples using the AHMbook R package
Some associated functions: AHMbook-package . bigCrossCorr . ch2marray . color_ramps . data_BerneseOberland . data_EurasianLynx . data_Finnmark . data_FrenchPeregrines . data_HubbardBrook . data_MHB2014 . data_MesoCarnivores . data_SwissAtlasHa . data_SwissEagleOwls . data_SwissMarbledWhite . data_SwissSquirrels . data_SwissTits . data_UKmarbledWhite . data_crestedTit . data_crossbillAHM . data_cswa . data_dragonflies . data_duskySalamanders . data_greenWoodpecker . data_simDynoccSpatialData . data_spottedWoodpecker . data_treeSparrow . data_ttdPeregrine . data_wagtail . data_waterVoles . data_wigglyLine . data_willowWarbler . e2dist . fitstats . getLVcorrMat . graphSSM . image_scale . map.Nmix.resi . modSelFP . piFuns . playRN . plot_Nmix_resi . ppc.plot . sim3Occ . simCJS . simComm . simDCM . simDM_simDM0 . simDSM . simData.fn . simDataDK . simDemoDynocc . simDynocc . simDynoccSpatial . simExpCorrRF . simFn . simFrogDisease . simHDS . simHDSg . simHDSopen . simHDSpoint . simHDStr . simIDS . simIssj.sim . simLdata . simMultMix . simNmix . simNmixSpatial . simNpC . simOcc . simOccSpatial . simOccttd . simPH . simPOP . simPPe . simPdata . simSpatialDS . simSpatialDSline . simSpatialDSte . simSpatialHDS . simWigglyOcc . simpleNmix . spline.prep . standardize . valid_data . zinit . 
Some associated R codes: bigCrossCorr.R . ch2marray_AHM2_3-4-1.R . color_ramps.R . data-fn_AHM1_4.3_Simulate_binomial_mixture_model.R . e2dist.R . fitstats_assessment_of_fit.R . getLVcorrMat_AHM2_8--.R . graphSSM_AHM2_1-6.R . helper_histCount.R . image_scale.R . modSelFP.R . piFun_customised_AHM1_7-7.R . playRN_AHM1_6-13-1_Simulate_Royle-Nichols_model.R . plot-Nmix-resi&map-Nmix-resi_AHM1_6-9-3_plotting.R . ppc-plot_AHM1_6-8_plot_posterior_predictive_check.R . sim3Occ_AHM1_10-10_Simulate_static_3level_occupancy.R . simCJS_AHM2_3-2-2.R . simComm_AHM1_11-2_Simulate_community_data.R . simDCM.R . simDM0_AHM2_2-5-1_simpleDailMadsen_model.R . simDM_AHM2_2-5-5_DailMadsen_model.R . simDSM.R . simDataDK1_21--.R . simDataDK_AHM2_10.R . simDemoDynocc_AHM2_4.R . simDynoccSpatial_AHM2_9.R . simDynocc_AHM2_3_Simulate_dynamic_occupancy.R . simExpCorrRF.R . simFn_AHM1_1-1_Simulate_Poisson_process.R . simFrogDisease.R . simHDS_AHM1_8-5-1_Simulate_hierarch_distance_sampling.R . simHDSg_AHM1_9-2-1_Simulate_hierarch_distance_sampling_groups.R . simHDSopen.R . simHDSpoint.R . simHDStr.R . simIDS.R . simIssj.sim.R . simLdata_AHM1_8-2-3_Simulate_line_transect_data.R . simMultMix_AHM2_2.7.1.R . simNmixSpatial_AHM2_9.R . simNmix_AHM1_6-5_Simulate_binom-multinom_mixtures.R . simNpC_AHM2_1-2-2.R . simOccCat.R . simOccSpatial_AHM2_9.R . simOcc_AHM1_10-5_Simulate_static_occupancy.R . simOccttd_AHM1_10-12-1_Simulate_timeToDetection_occupancy.R . simPH_AHM2_1-8-1.R . simPOP_AHM2_1-7-1.R . simPPe_AHM2_10.R . simPdata_AHM1_8-2-5-1_Simulate_point_transect_data.R . simPleNmix_AHM1_6-12_Simulate_Nmixture_data.R . simSpatialDS_AHM1_9-8-3_Simulate_spatial_DS.R . simSpatialDSline_AHM2_11-5.R . simSpatialDSte.R . simSpatialHDS.R . spline-prep_AHM1_10-14_Prepare_input_spline.R . standardize.R . stopifnot.R . tryPlotError.R . valid_data.R . wigglyOcc_AHM1_10-14_Simulate_occupancy_wiggly_covars.R . zinit.R .  Full AHMbook package functions and examples
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