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ADPclust
View on CRAN: Click
here
Download and install ADPclust package within the R console
Install from CRAN:
install.packages("ADPclust")
Install from Github:
library("remotes")
install_github("cran/ADPclust")
Install by package version:
library("remotes")
install_version("ADPclust", "0.7")
Attach the package and use:
library("ADPclust")
Maintained by
Yifan (Ethan) Xu
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-04-20
Latest Update: 2016-10-15
Description:
An implementation of ADPclust clustering procedures (Fast
Clustering Using Adaptive Density Peak Detection). The work is built and
improved upon the idea of Rodriguez and Laio (2014).
ADPclust clusters data by finding density peaks in a density-distance plot
generated from local multivariate Gaussian density estimation. It includes
an automatic centroids selection and parameter optimization algorithm, which
finds the number of clusters and cluster centroids by comparing average
silhouettes on a grid of testing clustering results; It also includes a user
interactive algorithm that allows the user to manually selects cluster
centroids from a two dimensional "density-distance plot". Here is the
research article associated with this package: "Wang, Xiao-Feng, and
Yifan Xu (2015) Fast clustering using adaptive
density peak detection." Statistical methods in medical research". url:
http://smm.sagepub.com/content/early/2015/10/15/0962280215609948.abstract.
How to cite:
Yifan (Ethan) Xu (2015). ADPclust: Fast Clustering Using Adaptive Density Peak Detection. R package version 0.7, https://cran.r-project.org/web/packages/ADPclust
Other packages that cited ADPclust R package
View ADPclust citation profile
Other R packages that ADPclust depends,
imports, suggests or enhances
Functions, R codes and Examples using
the ADPclust R package
Some associated functions: AMISE . FindCentersAutoD . FindCentersAutoV . FindClustersAuto . FindClustersGivenCenters . FindClustersManual . FindDistm . FindFD . FindH . ROT . adpclust . clust10 . clust3 . clust5.1 . clust5 . dat_gene . defCol . plot.adpclust . summary.adpclust .
Some associated R codes: ADPclust.R . AMISE.R . FindCentersAutoD.R . FindCentersAutoV.R . FindClustersAuto.R . FindClustersGivenCenters.R . FindClustersManual.R . FindDistm.R . FindFD.R . FindH.R . FindSilhouette.R . IsDup.R . PickCenters.R . ROT.R . clust10.R . clust3.R . clust5.1.R . clust5.R . dat_gene.R . defCol.R . plot.adpclust.R . summary.adpclust.R . Full ADPclust package functions and examples
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