R: Create visual quality check report from QC result.

subject.report.html

R Documentation

Create visual quality check report from QC result.

Create visual quality check report from QC result.

subject.report.html(
  subjects_dir,
  subjects_list,
  subjects_metadata = list(),
  out_dir = "fsbrain_qc_report",
  keep_existing_images = TRUE
)

`subjects_dir`	string. The FreeSurfer SUBJECTS_DIR, i.e., a directory containing the data for all your subjects, each in a subdir named after the subject identifier.
`subjects_list`	string vector. A vector of subject identifiers that match the directory names within subjects_dir.
`subjects_metadata`	named list, keys can be subjects from subjects_list. Each key can hold another named list of strings, represeting arbitrary metadata for that subject that will be displayed in the report.
`out_dir`	character string, path to output dir. The last directory part will be created if it does not exist (but not recursively).
`keep_existing_images`	logical, whether to keep existing images. A lot faster on 2nd call.