R: Create visual quality check report from QC result.

qc.report.html

R Documentation

Create visual quality check report from QC result.

Description

Create visual quality check report from QC result.

Usage

qc.report.html(
  subjects_dir,
  subjects_list,
  out_dir = "fsbrain_qc_report",
  subjects_metadata = list(),
  qc = NULL,
  ...
)

Arguments

`subjects_dir`	string. The FreeSurfer SUBJECTS_DIR, i.e., a directory containing the data for all your subjects, each in a subdir named after the subject identifier.
`subjects_list`	string vector. A vector of subject identifiers that match the directory names within subjects_dir.
`out_dir`	character string, path to output dir. The last directory part will be created if it does not exist (but not recursively).
`subjects_metadata`	named list, keys can be subjects from subjects_list. Each key can hold another named list of strings, represeting arbitrary metadata for that subject that will be displayed in the report.
`qc`	optional qc result. If NULL, a QC report is created using standard settings 'aparc' and 'thickness'.
`...`	passed on to `subject.report.html`.

Examples

## Not run: 
s = sjld("~/data/IXI_min/mri/freesurfer");
s$l = s$l[1:100]; # first few subjects are enough
fsbrain:::qc.report.html(s$d, s$l);

## End(Not run)