<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml"><head><title>R: Conversion to coda-formatted objects</title> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <link rel="stylesheet" type="text/css" href="https://rpkg.net/assets/examples.css" /> </head><body> <table width="100%" summary="page for mig.coda.list.mcmc"><tr><td>mig.coda.list.mcmc</td><td style="text-align: right;">R Documentation</td></tr></table> <h2>Conversion to coda-formatted objects</h2> <h3>Description</h3> <p>The functions convert MCMC traces (simulated using <code>run.mig.mcmc</code>) into objects that can be used with the <span class="pkg">coda</span> package. </p> <h3>Usage</h3> <pre> mig.coda.list.mcmc( mcmc.list = NULL, country = NULL, chain.ids = NULL, sim.dir = NULL, par.names = NULL, par.names.cs = NULL, low.memory = FALSE, ... ) </pre> <h3>Arguments</h3> <table summary="R argblock"> <tr valign="top"><td><code>mcmc.list</code></td> <td> <p>A list of objects of class <code>bayesMig.mcmc</code>, or an object of class <code>bayesMig.mcmc.set</code> or <code>bayesMig.prediction</code>. If <code>NULL</code>, the MCMCs are loaded from <code>sim.dir</code>. Either <code>mcmc</code> or <code>sim.dir</code> must be given.</p> </td></tr> <tr valign="top"><td><code>country</code></td> <td> <p>Location name or code. Used in connection with the <code>par.names.cs</code> argument (see below).</p> </td></tr> <tr valign="top"><td><code>chain.ids</code></td> <td> <p>Vector of chain identifiers. By default, all chains available in the <code>mcmc.list</code> object are included.</p> </td></tr> <tr valign="top"><td><code>sim.dir</code></td> <td> <p>Directory with the MCMC simulation results. Only used if <code>mcmc.list</code> is <code>NULL</code>.</p> </td></tr> <tr valign="top"><td><code>par.names</code></td> <td> <p>Names of country-independent parameters to be included. Default names are those returned by the <code>mig.parameter.names</code> function, which includes all country-independent parameters in the BHM.</p> </td></tr> <tr valign="top"><td><code>par.names.cs</code></td> <td> <p>Names of country-specific parameters to be included. The argument <code>country</code> is used to filter out traces that correspond to a specific location. If <code>country</code> is not given, traces of each parameter are given for all countries. Default names are those returned by <code>mig.parameter.names.cs()</code>, which includes all country-specific parameters in the BHM.</p> </td></tr> <tr valign="top"><td><code>low.memory</code></td> <td> <p>Logical indicating if the function should run in a memory-efficient mode.</p> </td></tr> <tr valign="top"><td><code>...</code></td> <td> <p>Additional arguments passed to the <span class="pkg">coda</span>'s <code>mcmc</code> function, such as <code>burnin</code> and <code>thin</code>.</p> </td></tr> </table> <h3>Value</h3> <p>Returns an object of class <code>mcmc.list</code> defined in the <span class="pkg">coda</span> package. </p> </body></html>