save.plots.label.html | R Documentation |
Generate HTML file called 'tree_scatter_label.html' from the
result of ipcaps
. This function is a part of workflow in
save.plots
. The clustering result is shown as a tree rendering
by the online Google Organizational Chart library. Note that the Internet is
required to view the HTML file.
save.plots.label.html(output.dir)
output.dir |
A result directory as the |
After running, this function generates the file called 'tree_scatter_label.html' in the same result directory. All plots are generated and saved as image files in the sub-directory 'images'.
NULL
save.html
,
save.plots
,
save.plots.cluster.html
,
and save.eigenplots.html
# Importantly, bed file, bim file, and fam file are required # Use the example files embedded in the package BED.file <- system.file("extdata","ipcaps_example.bed",package="IPCAPS") LABEL.file <- system.file("extdata","ipcaps_example_individuals.txt.gz",package="IPCAPS") my.cluster <- ipcaps(bed=BED.file,label.file=LABEL.file,lab.col=2,out=tempdir()) #Here, to generate HTML file save.plots.label.html(my.cluster$output.dir)